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See https://www.eclipse.org/forums/index.php/t/1106764/ . I bet what happened there is that a C source with a like size_t some_function(void* ptr); was tried to be parsed as a LFS pointer :-) LfsPointer.parseLfsPointer() needs to do better validations.
New Gerrit change created: https://git.eclipse.org/r/c/jgit/jgit/+/175494
Gerrit change https://git.eclipse.org/r/c/jgit/jgit/+/175494 was merged to [master]. Commit: http://git.eclipse.org/c/jgit/jgit.git/commit/?id=aa052ea09956385f5b90130f63ad4b07a3dee8c7